Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015938439.1_cds_XP_016483309.1_74438
CDS Infomation

[gene=LOC107804016] [db_xref=GeneID:107804016] [protein=polygalacturonase-like] [protein_id=XP_016483309.1] [location=join(2426..2872,3222..3511,3608..3836,3936..4154)] [gbkey=CDS]
Sequence

ATGTTGAGCAAAATGAGTCCCTTAGCAATTTTCCTAATTCTCTCCATCATCCTTTTCCAC
TTATCATTAGCAGCAAATACCATGTACAATGTCCAAACATTTGGAGCAAAATCCAATGGA
AAAACAGATTCATCAAAAGCATTTCTGAGTTCATGGGCTGCAGCCTGTGCATCTACTAGC
CCGGCCACTATTTACGTGCCACGTGGAAGTTACTTGATTCGTAATGCATACTTTTATGGC
CAAACATGCAAAAGCAAGGCTATTACTATACGTATTGATGGCATTCTCTTAGCTCCCCCT
GATTATAATGTAATTGGCAATGCTGGAAATTGGATCAAATTCGAAAAAGTTAACGGAGTT
TCCATCTATGGTGGAATCTTTGATGGACAAGGTGATGGTCTTTGGGATTGCAAAACCTCC
GGCAAGAATTGTCCAAAAGGCACTACGGCACTGGCCTTTTACAACTCGAACAACATCATA
ATCAGTGGAGTAACTGCACAAAATAGCCAAATGTTCCACATTTTGGTAGACGGCTGCAAA
AATGTGAAACTACAAGGAGTGAAGGTCTCAGCTCCAGGAAATAGCCCTAACACCGATGGA
ATTCACGTACAATTATCGACAGGAGTCAGTATTATGAACTCTCATATTGGTACTGGAGAT
GATTGTATCTCAATTGGCCCTGGAAATTCTAACTTATGGATAGAAGGCATTGCCTGTGGC
CCAGGCCATGGAATCAGCATTGGAAGCTTAGGTTGGAAATTACAAGAGCCTGGAGTCCAA
AATGTAACAATAAAGAGTGTTACCTTCACTGGAACAGAGAATGGTGTGAGAGTGAAAACT
TGGGCAAGGCCTAGCAATGGATTTGTTAGAGGTGTTCTATTTCAGCATATAGTTATGGCT
GATGTTCAAAATCCTATAATCATAGACCAAAATTACTGCCCTAACCATGAAAGTTGTCCT
CATCAGGGCTCTGGCGTAAAAATAAGTGATGTAACGTATCAAGACATACATGGAACATCA
GCTACAGAAGTTGGGGTGAAATTTGATTGTAGCAAAGTGAATCCATGCAGTGGCATAACA
CTTAAAGATGTGAATCTAAGTTACAAAGATCGTTCGGCTGAAGCATCATGTGTTAATGTT
GGAGGAAGAGTTTCTCGTTCAGAAGAACCTAGAAGTTGTTTATAA

Peptide Sequence

PEP ID

XP_016483309.1
PEP Infomation

PREDICTED: polygalacturonase-like [Nicotiana tabacum]
Sequence

MLSKMSPLAIFLILSIILFHLSLAANTMYNVQTFGAKSNGKTDSSKAFLSSWAAACASTS
PATIYVPRGSYLIRNAYFYGQTCKSKAITIRIDGILLAPPDYNVIGNAGNWIKFEKVNGV
SIYGGIFDGQGDGLWDCKTSGKNCPKGTTALAFYNSNNIIISGVTAQNSQMFHILVDGCK
NVKLQGVKVSAPGNSPNTDGIHVQLSTGVSIMNSHIGTGDDCISIGPGNSNLWIEGIACG
PGHGISIGSLGWKLQEPGVQNVTIKSVTFTGTENGVRVKTWARPSNGFVRGVLFQHIVMA
DVQNPIIIDQNYCPNHESCPHQGSGVKISDVTYQDIHGTSATEVGVKFDCSKVNPCSGIT
LKDVNLSYKDRSAEASCVNVGGRVSRSEEPRSCL

Transcript Sequence

Gene sequence data has not been registered.